Reference | Method | cDNA type | Age | Num of cells | Source | Seq Depth/cell | Genes/cell |
---|---|---|---|---|---|---|---|
Saraiva | C1 | Full-length | P25 | 30 | Olfactory sensory neurons | 4.4M | 4717 |
Tasic | SMARTer | Full-length | 8wks | 1679 | V1C | 8.7M | 7278 |
Zeisel | C1 | 5' | 3-5wks | 3005 | S1C & HIP | 0.5M | 4500 |
Macosko | Drop-seq | 3' | P14 | 44808 | Retina | ? | ? |
Rosenberg | SPLiT-seq | 3'(?) | P2 & P11 | 156049 | ? | ? | 4497 |
Dong | STRT | 3'(?) | E9.5-11.5 | 1916 | Multiple organs | 0.43M UMI | 6361 |
Han | Microwell-seq | 3' | E14.5 | >400,000 | Multiple organs | ? | 6500 |
Hook | Smart-Seq2 | Full-length | E15.5 & P7 | 396 | Midbrain & forebrain | ? | ? |
Mayer | Drop-seq & 10X | 3’ | E13.5, E14.5, E18.5 | 5622, 7401, 8543 | MGE, CGE, LGE | ? | 1626 |
Hammond | Drop-seq | 3’ | E14.5, P4/5, P30, P100, P540, injury | 76149 | Microglia | 40,000 – 60,000 reads | ? |
Loo | Drop-seq | 3’ | E14.5, P0 | 10,931 at E14.5; 7614 at P0 | Cortex | 12,000 reads | 1600 |